Installation of the latest version of graph tool with conda

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Installation of the latest version of graph tool with conda

Zahra Sheikhbahaee
Hi Tiago,

I am trying to install graph-tool on a server and the only way it is possible without root permission is via this command line:

conda install -c ostrokach-forge graph-tool

But its version is 
>>> graph_tool.__version__
'2.25 (commit , )'

well, how could I update this version in the conda environment to 2.27?

Thanks,
Zahra

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Re: Installation of the latest version of graph tool with conda

Tiago Peixoto
Administrator
Hi Zahra,

I'm not responsible for any anaconda package of graph-tool. They were made
by third parties, and you need to contact them and ask them to update to the
newest version.

Best,
Tiago

Am 06.07.2018 um 23:42 schrieb Zahra Sheikhbahaee:

> Hi Tiago,
>
> I am trying to install graph-tool on a server and the only way it is
> possible without root permission is via this command line:
>
> conda install -c ostrokach-forge graph-tool
>
> But its version is 
>>>> graph_tool.__version__
> '2.25 (commit , )'
>
> well, how could I update this version in the conda environment to 2.27?
>
> Thanks,
> Zahra
>
>
> _______________________________________________
> graph-tool mailing list
> [hidden email]
> https://lists.skewed.de/mailman/listinfo/graph-tool
>


--
Tiago de Paula Peixoto <[hidden email]>
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Re: Installation of the latest version of graph tool with conda

Zahra Sheikhbahaee
Hi Tiago,

I have been using channel "ostrokach-forge" to even install properly version 2.26 on a server and it constantly get error messages for its dependencies. I have used conda to install the dependencies but now I get this error:
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/anaconda3/lib/python3.5/site-packages/graph_tool/all.py", line 35, in <module>
    from graph_tool.draw import *
  File "/home/anaconda3/lib/python3.5/site-packages/graph_tool/draw/__init__.py", line 875, in <module>
    from .cairo_draw import graph_draw, cairo_draw, get_hierarchy_control_points, default_cm
  File "/home/anaconda3/lib/python3.5/site-packages/graph_tool/draw/cairo_draw.py", line 122, in <module>
    "font_slant": cairo.FONT_SLANT_NORMAL,
AttributeError: module 'cairo' has no attribute 'FONT_SLANT_NORMAL'

Do you have any suggestion how to solve this error message?

I installed cairocffi, cairo, pycairo but apparently none of them solve this error message.

Thanks in advance.

Best,
Zahra

On Sat, Jul 7, 2018 at 6:46 PM, Tiago de Paula Peixoto <[hidden email]> wrote:
Hi Zahra,

I'm not responsible for any anaconda package of graph-tool. They were made
by third parties, and you need to contact them and ask them to update to the
newest version.

Best,
Tiago

Am 06.07.2018 um 23:42 schrieb Zahra Sheikhbahaee:
> Hi Tiago,
>
> I am trying to install graph-tool on a server and the only way it is
> possible without root permission is via this command line:
>
> conda install -c ostrokach-forge graph-tool
>
> But its version is 
>>>> graph_tool.__version__
> '2.25 (commit , )'
>
> well, how could I update this version in the conda environment to 2.27?
>
> Thanks,
> Zahra
>
>
> _______________________________________________
> graph-tool mailing list
> [hidden email]
> https://lists.skewed.de/mailman/listinfo/graph-tool
>


--
Tiago de Paula Peixoto <[hidden email]>
_______________________________________________
graph-tool mailing list
[hidden email]
https://lists.skewed.de/mailman/listinfo/graph-tool


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[hidden email]
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Re: Installation of the latest version of graph tool with conda

Zahra Sheikhbahaee
Hi again,

I installed pycairo=1.10.0 again and reinstall graph-tool. Now I do not get the error message I posted in my previous email but I get the new one. The following error:

>>> import graph_tool
>>> from graph_tool.all import *
Gtk-Message: 18:16:20.063: Failed to load module "canberra-gtk-module"
Gtk-Message: 18:16:20.067: Failed to load module "canberra-gtk-module"
>>> import matplotlib.pyplot as plt
>>> g = Graph()
>>> v1 = g.add_vertex()
>>> v2 = g.add_vertex()
>>> e = g.add_edge(v1, v2)
>>> graph_draw(g, vertex_text=g.vertex_index, vertex_font_size=18,output_size=(200, 200))
Segmentation fault (core dumped)
 
I can see that I have gtk3 installed but I can not understand why it can not be loaded? Any suggestion how to solve all these errors?

Cheers,
Zahra

On Tue, Jul 10, 2018 at 4:12 PM, Zahra Sheikhbahaee <[hidden email]> wrote:
Hi Tiago,

I have been using channel "ostrokach-forge" to even install properly version 2.26 on a server and it constantly get error messages for its dependencies. I have used conda to install the dependencies but now I get this error:
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/anaconda3/lib/python3.5/site-packages/graph_tool/all.py", line 35, in <module>
    from graph_tool.draw import *
  File "/home/anaconda3/lib/python3.5/site-packages/graph_tool/draw/__init__.py", line 875, in <module>
    from .cairo_draw import graph_draw, cairo_draw, get_hierarchy_control_points, default_cm
  File "/home/anaconda3/lib/python3.5/site-packages/graph_tool/draw/cairo_draw.py", line 122, in <module>
    "font_slant": cairo.FONT_SLANT_NORMAL,
AttributeError: module 'cairo' has no attribute 'FONT_SLANT_NORMAL'

Do you have any suggestion how to solve this error message?

I installed cairocffi, cairo, pycairo but apparently none of them solve this error message.

Thanks in advance.

Best,
Zahra

On Sat, Jul 7, 2018 at 6:46 PM, Tiago de Paula Peixoto <[hidden email]> wrote:
Hi Zahra,

I'm not responsible for any anaconda package of graph-tool. They were made
by third parties, and you need to contact them and ask them to update to the
newest version.

Best,
Tiago

Am 06.07.2018 um 23:42 schrieb Zahra Sheikhbahaee:
> Hi Tiago,
>
> I am trying to install graph-tool on a server and the only way it is
> possible without root permission is via this command line:
>
> conda install -c ostrokach-forge graph-tool
>
> But its version is 
>>>> graph_tool.__version__
> '2.25 (commit , )'
>
> well, how could I update this version in the conda environment to 2.27?
>
> Thanks,
> Zahra
>
>
> _______________________________________________
> graph-tool mailing list
> [hidden email]
> https://lists.skewed.de/mailman/listinfo/graph-tool
>


--
Tiago de Paula Peixoto <[hidden email]>
_______________________________________________
graph-tool mailing list
[hidden email]
https://lists.skewed.de/mailman/listinfo/graph-tool



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Re: Installation of the latest version of graph tool with conda

Tiago Peixoto
Administrator
Am 10.07.2018 um 09:20 schrieb Zahra Sheikhbahaee:
> I can see that I have gtk3 installed but I can not understand why it can not
> be loaded? Any suggestion how to solve all these errors?

The gtk message is not an error, and it can be ignored.

The segfault is probably a bug with the package... You need to contact the
maintainer responsible.

To get an idea of what might be causing it, you can take a look at he GDB
backtrace.

Best,
Tiago

--
Tiago de Paula Peixoto <[hidden email]>
_______________________________________________
graph-tool mailing list
[hidden email]
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--
Tiago de Paula Peixoto <tiago@skewed.de>